Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs143532683 chr5:169011294 G/GATA 1.53E-8 507 22.37 23.63 6.83 KM Plot
LGG rs143759324 chr10:118461633 CAGAGAGAG/CAG 4.74E-5 509 23.5 19.03 11.63 KM Plot
LGG rs143921294 chr6:53128039 A/C 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs143928170 chr16:8715388 G/GCCACCCATATGCGGAGATGACC 3.0E-9 508 8.17 18.8 24.05 KM Plot
LGG rs144029839 chr6:53127252 TG/T 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs145610816 chr3:153672989 AT/A 0 505 22.1 22.3 0.23 KM Plot
LGG rs145731755 chr14:102180011 C/G 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs145742668 chr1:22123066 C/T 2.12E-6 502 21.7 26.08 14.6 KM Plot
LGG rs145943813 chr5:169048155 G/T 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs145954553 chr5:169051579 G/C 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs146182609 chr5:169051972 T/C 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs146235009 chr14:24414911 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs146346319 chr16:67792739 A/AG 4.13E-12 508 21.45 30.47 6.47 KM Plot
LGG rs146349075 chr5:169050586 T/C 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs146625073 chr3:53279629 C/A 4.08E-8 506 21.7 27.37 10.97 KM Plot